Index

A

AbundanceResult (class in jwspecabund) (class in jwspecabund.result) all_fits (jwspecfit.broad.BroadFitResult attribute), [1] (jwspecfit.BroadFitResult attribute), [1] alt_results (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) amplitude (jwspecfit.fitter.LineResult attribute), [1] (jwspecfit.LineResult attribute), [1] (jwspecmcmc.MCMCLineResult attribute) (jwspecmcmc.result.MCMCLineResult attribute) amplitude_err (jwspecmcmc.MCMCLineResult attribute) (jwspecmcmc.result.MCMCLineResult attribute) apply() (jwspecfit.constraints.ConstraintSet method)

ArO (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) ArO_err (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) asymmetric_gaussian() (in module jwspecfit.models) Av (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) (jwspecfit.dla.DLAResult attribute), [1] (jwspecfit.DLAResult attribute), [1] Av_err (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) Av_posterior (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute)

B

best_fit (jwspecfit.broad.BroadFitResult attribute), [1] (jwspecfit.BroadFitResult attribute), [1] beta_UV (jwspecfit.dla.DLAResult attribute), [1] (jwspecfit.DLAResult attribute), [1] beta_UV_err (jwspecfit.dla.DLAResult attribute), [1] (jwspecfit.DLAResult attribute), [1] bic_bootstrap (jwspecfit.broad.BroadFitResult attribute), [1] (jwspecfit.BroadFitResult attribute), [1] bic_both (jwspecfit.broad.BroadFitResult attribute), [1] (jwspecfit.BroadFitResult attribute), [1] (jwspecmcmc.MCMCBroadFitResult attribute) (jwspecmcmc.result.MCMCBroadFitResult attribute) bic_broad1 (jwspecfit.broad.BroadFitResult attribute), [1] (jwspecfit.BroadFitResult attribute), [1] (jwspecmcmc.MCMCBroadFitResult attribute) (jwspecmcmc.result.MCMCBroadFitResult attribute) bic_broad2 (jwspecfit.broad.BroadFitResult attribute), [1] (jwspecfit.BroadFitResult attribute), [1] (jwspecmcmc.MCMCBroadFitResult attribute) (jwspecmcmc.result.MCMCBroadFitResult attribute) bic_hei_bootstrap (jwspecfit.broad.BroadFitResult attribute) (jwspecfit.BroadFitResult attribute) bic_hei_both (jwspecfit.broad.BroadFitResult attribute) (jwspecfit.BroadFitResult attribute) (jwspecmcmc.MCMCBroadFitResult attribute) (jwspecmcmc.result.MCMCBroadFitResult attribute) bic_hei_broad1 (jwspecfit.broad.BroadFitResult attribute) (jwspecfit.BroadFitResult attribute) (jwspecmcmc.MCMCBroadFitResult attribute) (jwspecmcmc.result.MCMCBroadFitResult attribute) bic_hei_broad2 (jwspecfit.broad.BroadFitResult attribute) (jwspecfit.BroadFitResult attribute) (jwspecmcmc.MCMCBroadFitResult attribute) (jwspecmcmc.result.MCMCBroadFitResult attribute)

bic_hei_off (jwspecfit.broad.BroadFitResult attribute) (jwspecfit.BroadFitResult attribute) (jwspecmcmc.MCMCBroadFitResult attribute) (jwspecmcmc.result.MCMCBroadFitResult attribute) bic_narrow (jwspecfit.broad.BroadFitResult attribute), [1] (jwspecfit.BroadFitResult attribute), [1] (jwspecmcmc.MCMCBroadFitResult attribute) (jwspecmcmc.result.MCMCBroadFitResult attribute) bic_oiii_bootstrap (jwspecfit.broad.BroadFitResult attribute) (jwspecfit.BroadFitResult attribute) bic_oiii_both (jwspecfit.broad.BroadFitResult attribute) (jwspecfit.BroadFitResult attribute) (jwspecmcmc.MCMCBroadFitResult attribute) (jwspecmcmc.result.MCMCBroadFitResult attribute) bic_oiii_broad1 (jwspecfit.broad.BroadFitResult attribute) (jwspecfit.BroadFitResult attribute) (jwspecmcmc.MCMCBroadFitResult attribute) (jwspecmcmc.result.MCMCBroadFitResult attribute) bic_oiii_broad2 (jwspecfit.broad.BroadFitResult attribute) (jwspecfit.BroadFitResult attribute) (jwspecmcmc.MCMCBroadFitResult attribute) (jwspecmcmc.result.MCMCBroadFitResult attribute) bic_oiii_off (jwspecfit.broad.BroadFitResult attribute) (jwspecfit.BroadFitResult attribute) (jwspecmcmc.MCMCBroadFitResult attribute) (jwspecmcmc.result.MCMCBroadFitResult attribute) blended_doublets (jwspecfit.constraints.ConstraintSet attribute), [1] BroadFitResult (class in jwspecfit) (class in jwspecfit.broad) build_model() (in module jwspecfit.models)

C

cardelli_extinction() (in module jwspecabund) (in module jwspecabund.dust) centroid_A (jwspecfit.fitter.LineResult attribute), [1] (jwspecfit.LineResult attribute), [1] (jwspecmcmc.MCMCLineResult attribute) (jwspecmcmc.result.MCMCLineResult attribute) centroid_err (jwspecmcmc.MCMCLineResult attribute) (jwspecmcmc.result.MCMCLineResult attribute) chains (jwspecmcmc.MCMCBroadFitResult property) (jwspecmcmc.MCMCResult attribute) (jwspecmcmc.result.MCMCBroadFitResult property) (jwspecmcmc.result.MCMCResult attribute) chi2 (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) (jwspecfit.broad.BroadFitResult property) (jwspecfit.BroadFitResult property) (jwspecfit.FitResult attribute), [1] (jwspecfit.fitter.FitResult attribute), [1] chi2_coarse (jwspecfit.redshift.RedshiftResult attribute) (jwspecfit.RedshiftResult attribute) chi2_fine (jwspecfit.redshift.RedshiftResult attribute) (jwspecfit.RedshiftResult attribute) ci68 (jwspecfit.Peak attribute) (jwspecfit.redshift.Peak attribute) ci95 (jwspecfit.Peak attribute) (jwspecfit.redshift.Peak attribute) ciii_doublet_ratio (jwspecfit.constraints.ConstraintSet attribute) ciii_ratio_at_density() (in module jwspecabund.direct) CO (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) CO_err (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) CO_posterior (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) compute_abundances() (in module jwspecabund) compute_Av_balmer_pair() (in module jwspecabund) (in module jwspecabund.dust) compute_Av_from_balmer() (in module jwspecabund) (in module jwspecabund.dust) compute_Av_multi_balmer() (in module jwspecabund) (in module jwspecabund.dust) compute_D_Lya() (in module jwspecfit) (in module jwspecfit.dla) compute_ionic_abundances() (in module jwspecabund) (in module jwspecabund.direct) compute_line_ratios() (in module jwspecabund) (in module jwspecabund.strong_line)

compute_lya_escape_fraction() (in module jwspecabund) (in module jwspecabund.dust) compute_lya_escape_fraction_mc() (in module jwspecabund) (in module jwspecabund.dust) compute_ne() (in module jwspecabund) (in module jwspecabund.direct) compute_ne_CIII() (in module jwspecabund) (in module jwspecabund.direct) compute_ne_NIV() (in module jwspecabund) (in module jwspecabund.direct) compute_NO_martinez25() (in module jwspecabund) (in module jwspecabund.martinez25_icf) compute_NO_martinez25_locked() (in module jwspecabund.martinez25_icf) compute_Te_NII() (in module jwspecabund) (in module jwspecabund.direct) compute_Te_OIII() (in module jwspecabund) (in module jwspecabund.direct) compute_Te_OIII_1666() (in module jwspecabund) (in module jwspecabund.direct) compute_total_abundances() (in module jwspecabund) (in module jwspecabund.direct) constraints (jwspecfit.broad.BroadFitResult property) (jwspecfit.BroadFitResult property) (jwspecfit.FitResult attribute), [1] (jwspecfit.fitter.FitResult attribute), [1] (jwspecmcmc.likelihood.LikelihoodSpec attribute) (jwspecmcmc.MCMCBroadFitResult property) (jwspecmcmc.MCMCResult attribute) (jwspecmcmc.result.MCMCBroadFitResult property) (jwspecmcmc.result.MCMCResult attribute) ConstraintSet (class in jwspecfit.constraints) continuum (jwspecfit.broad.BroadFitResult property) (jwspecfit.BroadFitResult property) (jwspecfit.FitResult attribute), [1] (jwspecfit.fitter.FitResult attribute), [1] (jwspecmcmc.MCMCBroadFitResult property) (jwspecmcmc.MCMCResult attribute) (jwspecmcmc.result.MCMCBroadFitResult property) (jwspecmcmc.result.MCMCResult attribute) convergence (jwspecmcmc.MCMCBroadFitResult property) (jwspecmcmc.MCMCResult attribute) (jwspecmcmc.result.MCMCBroadFitResult property) (jwspecmcmc.result.MCMCResult attribute) copy() (jwspecfit.io.Spectrum method) (jwspecfit.Spectrum method) corner() (jwspecfit.dla.DLAResult method) (jwspecfit.DLAResult method)

D

dchi2 (jwspecfit.Peak attribute) (jwspecfit.redshift.Peak attribute) diagnostics (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) dlam_A (jwspecfit.io.Spectrum property) (jwspecfit.Spectrum property) DLAResult (class in jwspecfit) (class in jwspecfit.dla) doublet_flux_posterior() (jwspecmcmc.MCMCBroadFitResult method) (jwspecmcmc.MCMCResult method) (jwspecmcmc.result.MCMCBroadFitResult method) (jwspecmcmc.result.MCMCResult method)

doublet_snr() (jwspecmcmc.MCMCBroadFitResult method) (jwspecmcmc.MCMCResult method) (jwspecmcmc.result.MCMCBroadFitResult method) (jwspecmcmc.result.MCMCResult method) dust_correct_fluxes() (in module jwspecabund) (in module jwspecabund.dust)

E

edges (jwspecmcmc.likelihood.LikelihoodSpec attribute) effective_sample_size() (in module jwspecmcmc.diagnostics) err_flam (jwspecfit.io.Spectrum property) (jwspecfit.Spectrum property) err_ujy (jwspecfit.io.Spectrum attribute), [1] (jwspecfit.Spectrum attribute), [1] ew_A (jwspecfit.fitter.LineResult attribute), [1] (jwspecfit.LineResult attribute), [1] (jwspecmcmc.MCMCLineResult attribute) (jwspecmcmc.result.MCMCLineResult attribute)

excluded_lines (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) expand_free_to_full() (jwspecfit.constraints.ConstraintSet method) export_lines_txt() (in module jwspecfit) (in module jwspecfit.io)

F

failures (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) fit_continuum() (in module jwspecfit.continuum) fit_lines() (in module jwspecfit) (in module jwspecfit.fitter) (in module jwspecmcmc) fit_NHI() (in module jwspecfit) (in module jwspecfit.dla) fit_redshift() (in module jwspecfit) (in module jwspecfit.redshift) fit_with_broad() (in module jwspecfit) (in module jwspecfit.broad) (in module jwspecmcmc) fit_x_HI (jwspecfit.dla.DLAResult attribute) (jwspecfit.DLAResult attribute) FitResult (class in jwspecfit) (class in jwspecfit.fitter) flam (jwspecmcmc.likelihood.LikelihoodSpec attribute) flam_err (jwspecmcmc.likelihood.LikelihoodSpec attribute) flat_chains (jwspecmcmc.MCMCBroadFitResult property) (jwspecmcmc.MCMCResult attribute) (jwspecmcmc.result.MCMCBroadFitResult property) (jwspecmcmc.result.MCMCResult attribute) flat_chains_free (jwspecmcmc.MCMCBroadFitResult property) (jwspecmcmc.MCMCResult attribute) (jwspecmcmc.result.MCMCBroadFitResult property) (jwspecmcmc.result.MCMCResult attribute) flat_log_prob (jwspecmcmc.MCMCBroadFitResult property) (jwspecmcmc.MCMCResult attribute) (jwspecmcmc.result.MCMCBroadFitResult property) (jwspecmcmc.result.MCMCResult attribute) flux (jwspecfit.fitter.LineResult attribute), [1] (jwspecfit.LineResult attribute), [1] (jwspecmcmc.MCMCLineResult attribute) (jwspecmcmc.result.MCMCLineResult attribute)

flux_err (jwspecfit.fitter.LineResult attribute), [1] (jwspecfit.LineResult attribute), [1] (jwspecmcmc.MCMCLineResult attribute) (jwspecmcmc.result.MCMCLineResult attribute) flux_err_fit (jwspecfit.dla.DLAResult attribute), [1] (jwspecfit.DLAResult attribute), [1] flux_fit (jwspecfit.dla.DLAResult attribute), [1] (jwspecfit.DLAResult attribute), [1] flux_flam (jwspecfit.io.Spectrum property) (jwspecfit.Spectrum property) flux_posterior (jwspecmcmc.MCMCLineResult attribute) (jwspecmcmc.result.MCMCLineResult attribute) flux_ratio_posterior() (jwspecmcmc.MCMCBroadFitResult method) (jwspecmcmc.MCMCResult method) (jwspecmcmc.result.MCMCBroadFitResult method) (jwspecmcmc.result.MCMCResult method) flux_ujy (jwspecfit.io.Spectrum attribute), [1] (jwspecfit.Spectrum attribute), [1] flux_upper_limit() (jwspecfit.FitResult method) (jwspecfit.fitter.FitResult method) (jwspecmcmc.MCMCBroadFitResult method) (jwspecmcmc.MCMCResult method) (jwspecmcmc.result.MCMCBroadFitResult method) (jwspecmcmc.result.MCMCResult method) flux_upper_limits() (jwspecfit.FitResult method) (jwspecfit.fitter.FitResult method) (jwspecmcmc.MCMCBroadFitResult method) (jwspecmcmc.MCMCResult method) (jwspecmcmc.result.MCMCBroadFitResult method) (jwspecmcmc.result.MCMCResult method) forward_model() (in module jwspecabund) (in module jwspecabund.forward) free_mask() (jwspecfit.constraints.ConstraintSet method)

G

gaussian_binned() (in module jwspecfit.models) GaussianPrior (class in jwspecmcmc) (class in jwspecmcmc.priors) gelman_rubin() (in module jwspecmcmc.diagnostics) get_line_list() (in module jwspecfit) (in module jwspecfit.lines)

grating (jwspecfit.io.Spectrum attribute), [1] (jwspecfit.redshift.RedshiftResult attribute) (jwspecfit.RedshiftResult attribute) (jwspecfit.Spectrum attribute), [1]

H

hbeta_emissivity_aller84() (in module jwspecabund) (in module jwspecabund.forward) hei_broad_selected (jwspecfit.broad.BroadFitResult property) (jwspecfit.BroadFitResult property) (jwspecmcmc.MCMCBroadFitResult property) (jwspecmcmc.result.MCMCBroadFitResult property) hei_selected (jwspecfit.broad.BroadFitResult attribute) (jwspecfit.BroadFitResult attribute) (jwspecmcmc.MCMCBroadFitResult attribute) (jwspecmcmc.result.MCMCBroadFitResult attribute)

hi (jwspecmcmc.GaussianPrior attribute) (jwspecmcmc.LogUniformPrior attribute) (jwspecmcmc.priors.GaussianPrior attribute) (jwspecmcmc.priors.LogUniformPrior attribute) (jwspecmcmc.priors.UniformPrior attribute) (jwspecmcmc.UniformPrior attribute)

I

icf_argon() (in module jwspecabund) (in module jwspecabund.icf) icf_carbon() (in module jwspecabund.icf) icf_method (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) icf_neon() (in module jwspecabund) (in module jwspecabund.icf) icf_nitrogen() (in module jwspecabund) (in module jwspecabund.icf) icf_NpNpp_OpOpp() (in module jwspecabund.martinez25_icf) icf_NpOp() (in module jwspecabund.martinez25_icf) icf_NppNppp_Opp() (in module jwspecabund.martinez25_icf) icf_NppOpp() (in module jwspecabund.martinez25_icf) icf_NpppOpp() (in module jwspecabund.martinez25_icf) icf_sulfur() (in module jwspecabund) (in module jwspecabund.icf)

icf_values (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) igm_transmission() (in module jwspecfit) (in module jwspecfit.lyman_alpha) igm_z_min (jwspecfit.dla.DLAResult attribute) (jwspecfit.DLAResult attribute) ionic (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) ionic_ul_details (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) ionic_upper_limits (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) is_decisive (jwspecfit.redshift.RedshiftResult attribute) (jwspecfit.RedshiftResult attribute) is_upper_limit (jwspecfit.dla.DLAResult attribute) (jwspecfit.DLAResult attribute)

J

jwspecabund module jwspecabund.direct module jwspecabund.dust module jwspecabund.forward module jwspecabund.icf module jwspecabund.martinez25_icf module jwspecabund.result module jwspecabund.strong_line module jwspecfit module jwspecfit.broad module jwspecfit.constraints module jwspecfit.continuum module jwspecfit.data module jwspecfit.dla module jwspecfit.fitter module jwspecfit.io module

jwspecfit.lines module jwspecfit.lyman_alpha module jwspecfit.models module jwspecfit.plotting module jwspecfit.redshift module jwspecfit.resolution module jwspecmcmc module jwspecmcmc.diagnostics module jwspecmcmc.io module jwspecmcmc.jax_likelihood module jwspecmcmc.likelihood module jwspecmcmc.plotting module jwspecmcmc.priors module jwspecmcmc.result module jwspecmcmc.samplers module

L

lam_pivot_A (jwspecfit.dla.DLAResult attribute) (jwspecfit.DLAResult attribute) LikelihoodSpec (class in jwspecmcmc.likelihood) line_names (jwspecfit.broad.BroadFitResult property) (jwspecfit.BroadFitResult property) (jwspecfit.constraints.ConstraintSet attribute), [1] (jwspecfit.FitResult attribute), [1] (jwspecfit.fitter.FitResult attribute), [1] (jwspecmcmc.MCMCBroadFitResult property) (jwspecmcmc.MCMCResult attribute) (jwspecmcmc.result.MCMCBroadFitResult property) (jwspecmcmc.result.MCMCResult attribute) LineResult (class in jwspecfit) (class in jwspecfit.fitter) lines (jwspecfit.broad.BroadFitResult property) (jwspecfit.BroadFitResult property) (jwspecfit.FitResult attribute), [1] (jwspecfit.fitter.FitResult attribute), [1] (jwspecmcmc.MCMCBroadFitResult property) (jwspecmcmc.MCMCResult attribute) (jwspecmcmc.result.MCMCBroadFitResult property) (jwspecmcmc.result.MCMCResult attribute) lines_used (jwspecfit.Peak attribute) (jwspecfit.redshift.Peak attribute) (jwspecfit.redshift.RedshiftResult attribute) (jwspecfit.RedshiftResult attribute) lo (jwspecmcmc.GaussianPrior attribute) (jwspecmcmc.LogUniformPrior attribute) (jwspecmcmc.priors.GaussianPrior attribute) (jwspecmcmc.priors.LogUniformPrior attribute) (jwspecmcmc.priors.UniformPrior attribute) (jwspecmcmc.UniformPrior attribute) load_mcmc_result() (in module jwspecmcmc) (in module jwspecmcmc.io) load_result() (in module jwspecfit) (in module jwspecfit.io) log_evidence (jwspecfit.dla.DLAResult attribute), [1] (jwspecfit.DLAResult attribute), [1] log_F0 (jwspecfit.dla.DLAResult attribute), [1] (jwspecfit.DLAResult attribute), [1] log_F0_err (jwspecfit.dla.DLAResult attribute), [1] (jwspecfit.DLAResult attribute), [1] log_likelihood() (in module jwspecmcmc.likelihood)

log_NHI (jwspecfit.dla.DLAResult attribute), [1] (jwspecfit.DLAResult attribute), [1] log_NHI_err (jwspecfit.dla.DLAResult attribute), [1] (jwspecfit.DLAResult attribute), [1] log_NHI_upper95 (jwspecfit.dla.DLAResult attribute) (jwspecfit.DLAResult attribute) log_prior() (jwspecmcmc.priors.PriorSet method) (jwspecmcmc.PriorSet method) log_prob() (jwspecmcmc.GaussianPrior method) (jwspecmcmc.LogUniformPrior method) (jwspecmcmc.priors.GaussianPrior method) (jwspecmcmc.priors.LogUniformPrior method) (jwspecmcmc.priors.Prior method) (jwspecmcmc.priors.UniformPrior method) (jwspecmcmc.UniformPrior method) log_probability() (in module jwspecmcmc.likelihood) log_U_from_N43() (in module jwspecabund) (in module jwspecabund.martinez25_icf) log_U_from_O32() (in module jwspecabund) (in module jwspecabund.martinez25_icf) logU (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) logU_err (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) LogUniformPrior (class in jwspecmcmc) (class in jwspecmcmc.priors) lya_f_esc (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) lya_f_esc_details (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) lya_f_esc_err (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) lya_f_esc_posterior (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) lya_model() (in module jwspecfit) (in module jwspecfit.lyman_alpha) lya_model_fn (jwspecmcmc.likelihood.LikelihoodSpec attribute) lya_params (jwspecfit.dla.DLAResult attribute) (jwspecfit.DLAResult attribute) (jwspecfit.FitResult attribute) (jwspecfit.fitter.FitResult attribute) (jwspecmcmc.MCMCResult attribute) (jwspecmcmc.result.MCMCResult attribute)

M

make_jax_log_likelihood() (in module jwspecmcmc.jax_likelihood) mask_valid() (jwspecfit.io.Spectrum method) (jwspecfit.Spectrum method) mcmc_result (jwspecmcmc.MCMCBroadFitResult attribute) (jwspecmcmc.result.MCMCBroadFitResult attribute) MCMCBroadFitResult (class in jwspecmcmc) (class in jwspecmcmc.result) MCMCLineResult (class in jwspecmcmc) (class in jwspecmcmc.result) MCMCResult (class in jwspecmcmc) (class in jwspecmcmc.result) mean (jwspecmcmc.GaussianPrior attribute) (jwspecmcmc.priors.GaussianPrior attribute) meta (jwspecfit.io.Spectrum attribute), [1] (jwspecfit.Spectrum attribute), [1] method (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) model_best (jwspecfit.dla.DLAResult attribute), [1] (jwspecfit.DLAResult attribute), [1] model_flux (jwspecfit.broad.BroadFitResult property) (jwspecfit.BroadFitResult property) (jwspecfit.FitResult attribute), [1] (jwspecfit.fitter.FitResult attribute), [1] (jwspecmcmc.MCMCBroadFitResult property) (jwspecmcmc.MCMCResult attribute) (jwspecmcmc.result.MCMCBroadFitResult property) (jwspecmcmc.result.MCMCResult attribute) module jwspecabund jwspecabund.direct jwspecabund.dust jwspecabund.forward jwspecabund.icf jwspecabund.martinez25_icf jwspecabund.result jwspecabund.strong_line jwspecfit jwspecfit.broad jwspecfit.constraints jwspecfit.continuum jwspecfit.data jwspecfit.dla jwspecfit.fitter jwspecfit.io jwspecfit.lines jwspecfit.lyman_alpha jwspecfit.models jwspecfit.plotting jwspecfit.redshift jwspecfit.resolution jwspecmcmc jwspecmcmc.diagnostics jwspecmcmc.io jwspecmcmc.jax_likelihood jwspecmcmc.likelihood jwspecmcmc.plotting jwspecmcmc.priors jwspecmcmc.result jwspecmcmc.samplers

N

n_dim (jwspecmcmc.priors.PriorSet property) (jwspecmcmc.PriorSet property) n_lines (jwspecmcmc.likelihood.LikelihoodSpec attribute) n_lines_used (jwspecfit.Peak attribute) (jwspecfit.redshift.Peak attribute) n_lya (jwspecmcmc.likelihood.LikelihoodSpec attribute) n_pix (jwspecfit.io.Spectrum property) (jwspecfit.Spectrum property) name (jwspecfit.fitter.LineResult attribute), [1] (jwspecfit.LineResult attribute), [1] (jwspecmcmc.MCMCLineResult attribute) (jwspecmcmc.result.MCMCLineResult attribute) ne (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) ne_high (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) ne_low (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute)

ne_mid (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) NeO (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) NeO_err (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) niv_doublet_ratio (jwspecfit.constraints.ConstraintSet attribute) niv_ratio_at_density() (in module jwspecabund.direct) NO (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) NO_err (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) NO_icf_name (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) NO_posterior (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) NO_tiers (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute)

O

observable_lines() (in module jwspecfit) (in module jwspecfit.lines) observed_wave_A() (in module jwspecfit.lines) observed_wave_um() (in module jwspecfit.lines) OH (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) OH_err (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) OH_posterior (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute)

oiii_broad_selected (jwspecfit.broad.BroadFitResult property) (jwspecfit.BroadFitResult property) (jwspecmcmc.MCMCBroadFitResult property) (jwspecmcmc.result.MCMCBroadFitResult property) oiii_selected (jwspecfit.broad.BroadFitResult attribute) (jwspecfit.BroadFitResult attribute) (jwspecmcmc.MCMCBroadFitResult attribute) (jwspecmcmc.result.MCMCBroadFitResult attribute)

P

P_z_coarse (jwspecfit.redshift.RedshiftResult attribute) (jwspecfit.RedshiftResult attribute) P_z_fine (jwspecfit.redshift.RedshiftResult attribute) (jwspecfit.RedshiftResult attribute) params (jwspecfit.broad.BroadFitResult property) (jwspecfit.BroadFitResult property) (jwspecfit.FitResult attribute), [1] (jwspecfit.fitter.FitResult attribute), [1] (jwspecmcmc.MCMCBroadFitResult property) (jwspecmcmc.MCMCResult attribute) (jwspecmcmc.result.MCMCBroadFitResult property) (jwspecmcmc.result.MCMCResult attribute) Peak (class in jwspecfit) (class in jwspecfit.redshift) peaks (jwspecfit.redshift.RedshiftResult attribute) (jwspecfit.RedshiftResult attribute) pixel_weight() (in module jwspecfit.models) plot() (jwspecfit.dla.DLAResult method) (jwspecfit.DLAResult method) (jwspecfit.redshift.RedshiftResult method) (jwspecfit.RedshiftResult method) plot_2d_1d() (in module jwspecfit) (in module jwspecfit.plotting)

plot_corner() (in module jwspecmcmc) (in module jwspecmcmc.plotting) plot_fit() (in module jwspecfit) (in module jwspecfit.plotting) plot_fit_interactive() (in module jwspecfit) (in module jwspecfit.plotting) plot_flux_posterior() (in module jwspecmcmc) (in module jwspecmcmc.plotting) plot_spectrum_interactive() (in module jwspecfit) (in module jwspecfit.plotting) plot_traces() (in module jwspecmcmc) (in module jwspecmcmc.plotting) Prior (class in jwspecmcmc.priors) priors (jwspecmcmc.priors.PriorSet attribute) (jwspecmcmc.PriorSet attribute) priors_from_bounds() (in module jwspecmcmc) (in module jwspecmcmc.priors) PriorSet (class in jwspecmcmc) (class in jwspecmcmc.priors) prob (jwspecfit.Peak attribute) (jwspecfit.redshift.Peak attribute)

R

R (jwspecfit.io.Spectrum attribute), [1] (jwspecfit.Spectrum attribute), [1] R_from_pixels() (in module jwspecfit) (in module jwspecfit.resolution) R_grating() (in module jwspecfit.resolution) R_prism() (in module jwspecfit) (in module jwspecfit.resolution) ratios_used (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) read_dict() (in module jwspecfit) (in module jwspecfit.io) read_fits() (in module jwspecfit) (in module jwspecfit.io) read_npz() (in module jwspecfit) (in module jwspecfit.io)

RedshiftResult (class in jwspecfit) (class in jwspecfit.redshift) residuals (jwspecfit.broad.BroadFitResult property) (jwspecfit.BroadFitResult property) (jwspecfit.FitResult attribute), [1] (jwspecfit.fitter.FitResult attribute), [1] resolve_R() (in module jwspecfit) (in module jwspecfit.resolution) rest_wave_A (jwspecfit.fitter.LineResult attribute), [1] (jwspecfit.LineResult attribute), [1] (jwspecmcmc.MCMCLineResult attribute) (jwspecmcmc.result.MCMCLineResult attribute) rest_wave_A() (in module jwspecfit.lines) run_emcee() (in module jwspecmcmc.samplers) run_nautilus() (in module jwspecmcmc.samplers) run_nuts() (in module jwspecmcmc.samplers)

S

salim_attenuation() (in module jwspecabund) (in module jwspecabund.dust) sample() (jwspecmcmc.GaussianPrior method) (jwspecmcmc.LogUniformPrior method) (jwspecmcmc.priors.GaussianPrior method) (jwspecmcmc.priors.LogUniformPrior method) (jwspecmcmc.priors.Prior method) (jwspecmcmc.priors.PriorSet method) (jwspecmcmc.priors.UniformPrior method) (jwspecmcmc.PriorSet method) (jwspecmcmc.UniformPrior method) sampler_meta (jwspecmcmc.MCMCBroadFitResult property) (jwspecmcmc.MCMCResult attribute) (jwspecmcmc.result.MCMCBroadFitResult property) (jwspecmcmc.result.MCMCResult attribute) sampler_name (jwspecmcmc.MCMCBroadFitResult property) (jwspecmcmc.MCMCResult attribute) (jwspecmcmc.result.MCMCBroadFitResult property) (jwspecmcmc.result.MCMCResult attribute) samples (jwspecfit.dla.DLAResult attribute), [1] (jwspecfit.DLAResult attribute), [1] sanders25_metallicity() (in module jwspecabund) (in module jwspecabund.strong_line) save_mcmc_result() (in module jwspecmcmc) (in module jwspecmcmc.io) save_result() (in module jwspecfit) (in module jwspecfit.io) sci_2d (jwspecfit.io.Spectrum attribute), [1] (jwspecfit.Spectrum attribute), [1] selected_model (jwspecfit.broad.BroadFitResult attribute), [1] (jwspecfit.BroadFitResult attribute), [1] (jwspecmcmc.MCMCBroadFitResult attribute) (jwspecmcmc.result.MCMCBroadFitResult attribute) show_lines() (in module jwspecfit) (in module jwspecfit.lines) sigma_A (jwspecfit.fitter.LineResult attribute), [1] (jwspecfit.LineResult attribute), [1] (jwspecmcmc.MCMCLineResult attribute) (jwspecmcmc.result.MCMCLineResult attribute) sigma_err (jwspecmcmc.MCMCLineResult attribute) (jwspecmcmc.result.MCMCLineResult attribute) Sigma_HI (jwspecfit.dla.DLAResult attribute), [1] (jwspecfit.DLAResult attribute), [1]

sigma_inst_A() (in module jwspecfit) (in module jwspecfit.resolution) sigma_inst_kms() (in module jwspecfit.resolution) skewed_gaussian_binned() (in module jwspecfit.lyman_alpha) (in module jwspecfit.models) snr (jwspecfit.fitter.LineResult property) (jwspecfit.LineResult property) (jwspecmcmc.MCMCLineResult attribute) (jwspecmcmc.result.MCMCLineResult attribute) snr_int_cont (jwspecfit.fitter.LineResult attribute), [1] (jwspecfit.LineResult attribute), [1] snr_int_err (jwspecfit.fitter.LineResult attribute), [1] (jwspecfit.LineResult attribute), [1] snr_peak_cont (jwspecfit.fitter.LineResult attribute), [1] (jwspecfit.LineResult attribute), [1] snr_peak_err (jwspecfit.fitter.LineResult attribute), [1] (jwspecfit.LineResult attribute), [1] SO (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) SO_err (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) spec (jwspecfit.redshift.RedshiftResult attribute) (jwspecfit.RedshiftResult attribute) Spectrum (class in jwspecfit) (class in jwspecfit.io) spectrum (jwspecfit.broad.BroadFitResult property) (jwspecfit.BroadFitResult property) (jwspecfit.FitResult attribute), [1] (jwspecfit.fitter.FitResult attribute), [1] (jwspecmcmc.MCMCBroadFitResult property) (jwspecmcmc.MCMCResult attribute) (jwspecmcmc.result.MCMCBroadFitResult property) (jwspecmcmc.result.MCMCResult attribute) std (jwspecmcmc.GaussianPrior attribute) (jwspecmcmc.priors.GaussianPrior attribute) success (jwspecfit.broad.BroadFitResult property) (jwspecfit.BroadFitResult property) (jwspecfit.FitResult attribute), [1] (jwspecfit.fitter.FitResult attribute), [1] summarise_convergence() (in module jwspecmcmc.diagnostics) summary() (jwspecabund.AbundanceResult method) (jwspecabund.result.AbundanceResult method) (jwspecfit.dla.DLAResult method) (jwspecfit.DLAResult method)

T

tau_DLA() (in module jwspecfit) (in module jwspecfit.dla) tau_IGM_DW() (in module jwspecfit) (in module jwspecfit.dla) Te_high (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) Te_high_err (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) Te_low (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute) Te_low_err (jwspecabund.AbundanceResult attribute) (jwspecabund.result.AbundanceResult attribute)

Te_low_from_high() (in module jwspecabund) (in module jwspecabund.direct) tie_balmer_to_oiii (jwspecfit.constraints.ConstraintSet attribute), [1] tie_nii (jwspecfit.constraints.ConstraintSet attribute), [1] tie_uv_centroids (jwspecfit.constraints.ConstraintSet attribute) tie_uv_doublets (jwspecfit.constraints.ConstraintSet attribute) tie_uv_widths (jwspecfit.constraints.ConstraintSet attribute) to_fit_result() (jwspecmcmc.MCMCBroadFitResult method) (jwspecmcmc.MCMCResult method) (jwspecmcmc.result.MCMCBroadFitResult method) (jwspecmcmc.result.MCMCResult method)

U

UniformPrior (class in jwspecmcmc) (class in jwspecmcmc.priors)

upper_limit() (jwspecfit.fitter.LineResult method) (jwspecfit.LineResult method)

V

valid (jwspecmcmc.likelihood.LikelihoodSpec attribute)

voigt_H() (in module jwspecfit.dla)

W

w_pix (jwspecmcmc.likelihood.LikelihoodSpec attribute) wave_A (jwspecfit.io.Spectrum property) (jwspecfit.Spectrum property) wave_edges_A (jwspecfit.io.Spectrum property) (jwspecfit.Spectrum property)

wave_fit (jwspecfit.dla.DLAResult attribute), [1] (jwspecfit.DLAResult attribute), [1] wave_um (jwspecfit.io.Spectrum attribute), [1] (jwspecfit.Spectrum attribute), [1]

X

x_HI (jwspecfit.dla.DLAResult attribute) (jwspecfit.DLAResult attribute)

x_HI_err (jwspecfit.dla.DLAResult attribute) (jwspecfit.DLAResult attribute)

Z

z (jwspecfit.dla.DLAResult attribute), [1] (jwspecfit.DLAResult attribute), [1] (jwspecfit.io.Spectrum attribute), [1] (jwspecfit.Peak attribute) (jwspecfit.redshift.Peak attribute) (jwspecfit.Spectrum attribute), [1] z_best (jwspecfit.redshift.RedshiftResult attribute) (jwspecfit.RedshiftResult attribute)

z_ci68 (jwspecfit.redshift.RedshiftResult attribute) (jwspecfit.RedshiftResult attribute) z_ci95 (jwspecfit.redshift.RedshiftResult attribute) (jwspecfit.RedshiftResult attribute) z_grid_coarse (jwspecfit.redshift.RedshiftResult attribute) (jwspecfit.RedshiftResult attribute) z_grid_fine (jwspecfit.redshift.RedshiftResult attribute) (jwspecfit.RedshiftResult attribute)